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DEFINED_PHASES=configure install postinst prepare setup
DEPEND=dev-libs/boost sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 sci-biology/seqan:1.4 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
DESCRIPTION=Python-based splice junction mapper for RNA-Seq reads using bowtie2
EAPI=6
HOMEPAGE=https://ccb.jhu.edu/software/tophat/
IUSE=debug python_targets_python2_7
KEYWORDS=~amd64 ~x86
LICENSE=Artistic
RDEPEND=dev-libs/boost sci-biology/samtools:0.1-legacy sci-biology/bowtie:2
SLOT=0
SRC_URI=https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz
_eclass_exported_funcs=pkg_postinst:- pkg_setup:python-single-r1 src_prepare:- src_configure:- src_install:-
_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c eutils 9d81603248f2ba3ec59124320d123e5e flag-o-matic d270fa247153df66074f795fa42dba3e libtool 4890219c51da247200223277f993e054 multilib 23ae8c186171e6476af098d2a50d0ee0 python-single-r1 2ebea8fbab356d63110245129a67a6dd python-utils-r1 2e6826f6a93ad2acf904eecf5b5fb6d2 toolchain-funcs d513d423d449877e49d99af3f7af7acb
_md5_=99a8a65bd99f7819e12ab99f02b47509
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