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# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=4
inherit eutils toolchain-funcs
MY_P=GlimmerHMM
DESCRIPTION="A eukaryotic gene finding system from TIGR"
HOMEPAGE="http://www.cbcb.umd.edu/software/GlimmerHMM/"
SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/${MY_P}-${PV}.tar.gz"
LICENSE="Artistic"
SLOT="0"
IUSE=""
KEYWORDS="amd64 x86"
src_unpack() {
unpack ${A}
mv GlimmerHMM ${P}
}
src_prepare() {
sed \
-e 's|\(my $scriptdir=\)$FindBin::Bin|\1"/usr/libexec/'${PN}'/training_utils"|' \
-e 's|\(use lib\) $FindBin::Bin|\1 "/usr/share/'${PN}'/lib"|' \
-i "${S}/train/trainGlimmerHMM" || die
epatch "${FILESDIR}"/${PV}-gentoo.patch
tc-export CC CXX
}
src_compile() {
emake -C "${S}/sources"
emake -C "${S}/train"
}
src_install() {
dobin sources/glimmerhmm train/trainGlimmerHMM
insinto /usr/share/${PN}/lib
doins train/*.pm
insinto /usr/share/${PN}/models
doins -r trained_dir/*
exeinto /usr/libexec/${PN}/training_utils
doexe train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore}
dodoc README.first train/readme.train
}
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