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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
PYTHON_COMPAT=( python{2_7,3_4,3_5} )
inherit perl-functions python-r1 toolchain-funcs
MY_PV=${PV//_/}
DESCRIPTION="A rapid whole genome aligner"
HOMEPAGE="http://mummer.sourceforge.net/"
SRC_URI="https://github.com/gmarcais/${PN}/releases/download/v${MY_PV}/${PN}-${MY_PV}.tar.gz -> ${P}.tar.gz"
LICENSE="Artistic"
SLOT="0"
IUSE="openmp perl python"
KEYWORDS="~amd64 ~x86"
DEPEND="
python? (
${PYTHON_DEPS}
dev-lang/swig:0
)"
RDEPEND="
app-shells/tcsh
dev-lang/perl:=
python? ( ${PYTHON_DEPS} )"
REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
S=${WORKDIR}/${PN}-${MY_PV}
pkg_pretend() {
[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
}
pkg_setup() {
[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
use python && preamble="python_foreach_impl run_in_build_dir"
}
src_configure() {
perl_set_version
configure() {
local pythonconf
if use python; then
pythonconf="--enable-python-binding=$(python_get_sitedir)"
else
pythonconf="--disable-python-binding"
fi
ECONF_SOURCE="${S}" econf \
--disable-static \
--disable-ruby-binding \
$(use_enable perl perl-binding "${VENDOR_LIB}") \
$(use_enable openmp) \
$(use_enable python swig) \
"${pythonconf}"
}
${preamble} configure
}
src_compile() {
${preamble} default
}
src_install() {
${preamble} default
einstalldocs
# avoid file collision
mv "${ED%/}"/usr/bin/{,mummer-}annotate || die
# move perl module into right place
mkdir -p "${D%/}${VENDOR_LIB}" || die
mv "${ED%/}"/usr/$(get_libdir)/mummer/Foundation.pm "${D%/}${VENDOR_LIB}" || die
# no static libs, can purge .la files
find "${D}" -name '*.la' -delete || die
}
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