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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
inherit toolchain-funcs
DESCRIPTION="Prototype ncRNA genefinder"
HOMEPAGE="http://selab.janelia.org/software.html"
SRC_URI="mirror://gentoo/${P}.tar.bz2"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
RDEPEND="
dev-lang/perl
sci-biology/hmmer:2"
DEPEND="${RDEPEND}"
PATCHES=(
"${FILESDIR}"/${P}-glibc-2.10.patch
"${FILESDIR}"/${P}-ldflags.patch
)
src_prepare() {
default
sed \
-e "s:^CC.*:CC = $(tc-getCC):" \
-e "/^AR/s:ar:$(tc-getAR):g" \
-e "/^RANLIB/s:ranlib:$(tc-getRANLIB):g" \
-e "/CFLAGS/s:=.*$:= ${CFLAGS}:" \
-i {src,squid,squid02}/Makefile || die
rm -v squid*/*.a || die
}
src_compile() {
local d
for d in squid squid02 src; do
emake -C ${d}
done
}
src_install() {
dobin src/{cfgbuild,eqrna,eqrna_sample,rnamat_main} scripts/*
newdoc 00README README
dodoc -r documentation/.
insinto /usr/share/${PN}/data
doins -r lib/.
insinto /usr/share/${PN}/demos
doins -r Demos/.
# Sets the path to the QRNA data files
doenvd "${FILESDIR}"/26qrna
}
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