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authorOlivier Fisette <ribosome@gentoo.org>2005-01-30 18:21:09 +0000
committerOlivier Fisette <ribosome@gentoo.org>2005-01-30 18:21:09 +0000
commitb0399198a77ad4e894352a77ecd98c17d87709eb (patch)
tree80e7e9e1c08bffc578035bde8bf94a7f5806e883 /sci-biology
parent(Portage version: 2.0.51-r15) (Manifest recommit) (diff)
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Ebuild cleanups
(Portage version: 2.0.51-r15)
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/seaview/ChangeLog6
-rw-r--r--sci-biology/seaview/seaview-20041220.ebuild6
-rw-r--r--sci-biology/staden/ChangeLog5
-rw-r--r--sci-biology/staden/staden-1.5.3.ebuild15
-rw-r--r--sci-biology/tree-puzzle/ChangeLog5
-rw-r--r--sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild7
-rw-r--r--sci-biology/treeviewx/ChangeLog7
-rw-r--r--sci-biology/treeviewx/treeviewx-0.4.ebuild12
-rw-r--r--sci-biology/vienna-rna/ChangeLog5
-rw-r--r--sci-biology/vienna-rna/vienna-rna-1.4.ebuild12
10 files changed, 49 insertions, 31 deletions
diff --git a/sci-biology/seaview/ChangeLog b/sci-biology/seaview/ChangeLog
index e108db353718..441d6327e446 100644
--- a/sci-biology/seaview/ChangeLog
+++ b/sci-biology/seaview/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/seaview
# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.3 2005/01/09 18:39:11 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.4 2005/01/30 18:21:08 ribosome Exp $
+
+ 30 Jan 2005; Olivier Fisette <ribosome@gentoo.org>
+ seaview-20041220.ebuild:
+ Ebuild cleanup.
*seaview-20041220 (09 Jan 2005)
diff --git a/sci-biology/seaview/seaview-20041220.ebuild b/sci-biology/seaview/seaview-20041220.ebuild
index 00dfb5320c4b..b786d9e46349 100644
--- a/sci-biology/seaview/seaview-20041220.ebuild
+++ b/sci-biology/seaview/seaview-20041220.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-20041220.ebuild,v 1.1 2005/01/09 18:39:11 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-20041220.ebuild,v 1.2 2005/01/30 18:21:09 ribosome Exp $
DESCRIPTION="A graphical multiple sequence alignment editor"
HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html"
@@ -17,8 +17,8 @@ DEPEND="x11-libs/fltk
src_compile() {
# Corrects location of libfltk.
CFLAGS="${CFLAGS} -c -I/usr/include/fltk-1.1"
- sed -i -e "s%\"seaview.help\", %\"/usr/share/${PN}/seaview.help\", %" seaview.cxx
- sed -i -e 's:-L$(FLTK)/lib:-L/usr/lib/fltk-1.1:' Makefile
+ sed -i -e "s%\"seaview.help\", %\"/usr/share/${PN}/seaview.help\", %" seaview.cxx || die
+ sed -i -e 's:-L$(FLTK)/lib:-L/usr/lib/fltk-1.1:' Makefile || die
emake -e || die
}
diff --git a/sci-biology/staden/ChangeLog b/sci-biology/staden/ChangeLog
index 233cc1793ebe..d314f704a87a 100644
--- a/sci-biology/staden/ChangeLog
+++ b/sci-biology/staden/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/staden
# Copyright 1999-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/staden/ChangeLog,v 1.9 2005/01/25 04:19:24 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/staden/ChangeLog,v 1.10 2005/01/30 18:21:09 ribosome Exp $
+
+ 30 Jan 2005; Olivier Fisette <ribosome@gentoo.org> staden-1.5.3.ebuild:
+ Ebuild cleanup.
24 Jan 2005; Olivier Fisette <ribosome@gentoo.org>
+files/staden-1.5.3-mutlib-gcc-3.4.patch, staden-1.5.3.ebuild:
diff --git a/sci-biology/staden/staden-1.5.3.ebuild b/sci-biology/staden/staden-1.5.3.ebuild
index 0d0a5891b7fc..7f14ec42e436 100644
--- a/sci-biology/staden/staden-1.5.3.ebuild
+++ b/sci-biology/staden/staden-1.5.3.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/staden/staden-1.5.3.ebuild,v 1.3 2005/01/25 04:19:24 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/staden/staden-1.5.3.ebuild,v 1.4 2005/01/30 18:21:09 ribosome Exp $
inherit eutils toolchain-funcs
@@ -76,7 +76,7 @@ src_unpack() {
epatch ${FILESDIR}/${P}-mutlib-gcc-3.4.patch
cd ${S}/src/mk
# Remove the "-fpic" flag. This will be replaced by "-fPIC".
- sed -i -e 's/SHLIB_CFLAGS = -fpic/SHLIB_CFLAGS = /' linux.mk
+ sed -i -e 's/SHLIB_CFLAGS = -fpic/SHLIB_CFLAGS = /' linux.mk || die
cd ${S}
# "getopt" is incorrectly included as an extern (for Win32 compatibility).
@@ -99,15 +99,15 @@ src_unpack() {
# Documentation build process cannot find "update-nodes.el".
cd ${S}/doc/manual/tools
- sed -i -e 's%emacs -batch $1 -l ${DOCDIR:-.}/tools/update-nodes.el%emacs -batch $1 -l ${DOCDIR:-..}/manual/tools/update-nodes.el%' update-nodes
+ sed -i -e 's%emacs -batch $1 -l ${DOCDIR:-.}/tools/update-nodes.el%emacs -batch $1 -l ${DOCDIR:-..}/manual/tools/update-nodes.el%' update-nodes || die
# Perl scripts search for "pearl" in "/usr/local".
for SCRIPT in *.pl texi2html; do
- sed -i -e 's%/usr/local/bin/perl%/usr/bin/perl%' ${SCRIPT}
+ sed -i -e 's%/usr/local/bin/perl%/usr/bin/perl%' ${SCRIPT} || die
done
# The "convert" tool from Imagemagick is searched for in "/usr/X11R6".
- sed -i -e 's%/usr/X11R6/bin/convert%/usr/bin/convert%' make_ps
+ sed -i -e 's%/usr/X11R6/bin/convert%/usr/bin/convert%' make_ps | die
# Solves issues with images in the exercise* texi files.
cd ${S}/course/texi
@@ -120,8 +120,9 @@ src_unpack() {
# system global Makefile. We also want only "-fPIC" shared libraries.
einfo "Applying user-defined compilation/linking flags:"
cd ${S}/src/mk
- sed -i -e "s/COPT = -O2 -g3 -DNDEBUG/COPT = ${CFLAGS:-"-O2 -g3 -DNDEBUG"} -fPIC/" global.mk
- sed -i -e "s/FOPT = -O2 -g3 -DNDEBUG/FOPT = ${FFLAGS:-"-O2 -g3 -DNDEBUG"} -fPIC/" global.mk
+ sed -e "s/COPT = -O2 -g3 -DNDEBUG/COPT = ${CFLAGS:-"-O2 -g3 -DNDEBUG"} -fPIC/" \
+ -e "s/FOPT = -O2 -g3 -DNDEBUG/FOPT = ${FFLAGS:-"-O2 -g3 -DNDEBUG"} -fPIC/" \
+ -i global.mk || die
}
src_compile() {
diff --git a/sci-biology/tree-puzzle/ChangeLog b/sci-biology/tree-puzzle/ChangeLog
index 6c04fe8b9907..f55cb102ddbe 100644
--- a/sci-biology/tree-puzzle/ChangeLog
+++ b/sci-biology/tree-puzzle/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/tree-puzzle
# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/tree-puzzle/ChangeLog,v 1.5 2005/01/18 17:13:08 luckyduck Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/tree-puzzle/ChangeLog,v 1.6 2005/01/30 18:21:09 ribosome Exp $
+
+ 30 Jan 2005; Olivier Fisette <ribosome@gentoo.org> tree-puzzle-5.2.ebuild:
+ Ebuild cleanup.
18 Jan 2005; Jan Brinkmann <luckyduck@gentoo.org> tree-puzzle-5.2.ebuild:
added ~amd64 to KEYWORDS. fixes bug #78237
diff --git a/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild b/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild
index 2e8169627e2a..60f2c53dbf3e 100644
--- a/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild
+++ b/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild,v 1.3 2005/01/18 17:13:08 luckyduck Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild,v 1.4 2005/01/30 18:21:09 ribosome Exp $
inherit toolchain-funcs
@@ -26,8 +26,9 @@ src_compile() {
econf || die
cd ${S}/src
if ! use mpi; then
- sed -i -e 's:bin_PROGRAMS = puzzle$(EXEEXT) ppuzzle:bin_PROGRAMS = puzzle :' Makefile
- sed -i -e 's:DIST_SOURCES = $(ppuzzle_SOURCES) $(puzzle_SOURCES):DIST_SOURCES = $(puzzle_SOURCES):' Makefile
+ sed -e 's:bin_PROGRAMS = puzzle$(EXEEXT) ppuzzle:bin_PROGRAMS = puzzle :' \
+ -e 's:DIST_SOURCES = $(ppuzzle_SOURCES) $(puzzle_SOURCES):DIST_SOURCES = $(puzzle_SOURCES):' \
+ -i Makefile || die
fi
cd ${S}
emake || die
diff --git a/sci-biology/treeviewx/ChangeLog b/sci-biology/treeviewx/ChangeLog
index c8c33e4f7e54..6c7fffe15720 100644
--- a/sci-biology/treeviewx/ChangeLog
+++ b/sci-biology/treeviewx/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/treeviewx
-# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/treeviewx/ChangeLog,v 1.2 2004/12/23 20:20:43 swegener Exp $
+# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/treeviewx/ChangeLog,v 1.3 2005/01/30 18:21:09 ribosome Exp $
+
+ 30 Jan 2005; Olivier Fisette <ribosome@gentoo.org> treeviewx-0.4.ebuild:
+ Ebuild cleanup.
*treeviewx-0.4 (23 Dec 2004)
diff --git a/sci-biology/treeviewx/treeviewx-0.4.ebuild b/sci-biology/treeviewx/treeviewx-0.4.ebuild
index 4731c52a315d..fa113cc6130d 100644
--- a/sci-biology/treeviewx/treeviewx-0.4.ebuild
+++ b/sci-biology/treeviewx/treeviewx-0.4.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2004 Gentoo Foundation
+# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/treeviewx/treeviewx-0.4.ebuild,v 1.1 2004/12/23 18:11:05 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/treeviewx/treeviewx-0.4.ebuild,v 1.2 2005/01/30 18:21:09 ribosome Exp $
DESCRIPTION="A phylogenetic tree viewer"
HOMEPAGE="http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/"
@@ -29,13 +29,13 @@ src_compile() {
econf || die
# The configure script may pick the Unicode wxGTK.
if grep -q "gtk2u" Makefile; then
- sed -i -e 's/gtk2u/gtk2/' Makefile
+ sed -i -e 's/gtk2u/gtk2/' Makefile || die
cd TreeLib
- sed -i -e 's/gtk2u/gtk2/' Makefile
+ sed -i -e 's/gtk2u/gtk2/' Makefile || die
cd ../ncl-2.0
- sed -i -e 's/gtk2u/gtk2/' Makefile
+ sed -i -e 's/gtk2u/gtk2/' Makefile || die
cd src
- sed -i -e 's/gtk2u/gtk2/' Makefile
+ sed -i -e 's/gtk2u/gtk2/' Makefile || die
fi
cd ${S}
emake || die
diff --git a/sci-biology/vienna-rna/ChangeLog b/sci-biology/vienna-rna/ChangeLog
index 881a324cf7ac..82cd35e907d0 100644
--- a/sci-biology/vienna-rna/ChangeLog
+++ b/sci-biology/vienna-rna/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/vienna-rna
# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.4 2005/01/09 18:48:37 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.5 2005/01/30 18:21:09 ribosome Exp $
+
+ 30 Jan 2005; Olivier Fisette <ribosome@gentoo.org> vienna-rna-1.4.ebuild:
+ Ebuild cleanup.
*vienna-rna-1.5_beta (09 Jan 2005)
diff --git a/sci-biology/vienna-rna/vienna-rna-1.4.ebuild b/sci-biology/vienna-rna/vienna-rna-1.4.ebuild
index fd01ab896cd9..fd15d62688d2 100644
--- a/sci-biology/vienna-rna/vienna-rna-1.4.ebuild
+++ b/sci-biology/vienna-rna/vienna-rna-1.4.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.4.ebuild,v 1.2 2005/01/09 18:48:37 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.4.ebuild,v 1.3 2005/01/30 18:21:09 ribosome Exp $
inherit flag-o-matic
@@ -19,11 +19,11 @@ DEPEND="perl? ( dev-lang/perl )
S="${WORKDIR}/ViennaRNA-${PV}"
src_compile() {
- sed -ie 's:/usr/local/bin/perl:/usr/bin/perl:' Perl/RNAfold.pl
- sed -ie 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/ct2b.pl
- sed -ie 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/b2mt.pl
- sed -ie 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/dpzoom.pl
- sed -ie 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/mountain.pl
+ sed -i -e 's:/usr/local/bin/perl:/usr/bin/perl:' Perl/RNAfold.pl || die
+ sed -i -e 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/ct2b.pl || die
+ sed -i -e 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/b2mt.pl || die
+ sed -i -e 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/dpzoom.pl || die
+ sed -i -e 's:/usr/local/bin/perl:/usr/bin/perl:' Utils/mountain.pl || die
append-flags -I../H
make -e library programs gammel subopt || die
use perl && make -e perl || die