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| author |   David Seifert <soap@gentoo.org> | 2023-04-06 21:29:07 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2023-04-06 21:29:07 +0200 |
| commit | d3ddf57e6ff7731bc7ceba004419cac3d6efddb1 (patch) | |
| tree | 0dec2c5c7c941fccd6b511eb7ecfb10028aa2491 /sci-biology | |
| parent | sci-biology/pysam: drop 0.20.0 (diff) | |
| download | gentoo-d3ddf57e6ff7731bc7ceba004419cac3d6efddb1.tar.gz gentoo-d3ddf57e6ff7731bc7ceba004419cac3d6efddb1.tar.bz2 gentoo-d3ddf57e6ff7731bc7ceba004419cac3d6efddb1.zip | |
sci-biology/samtools: drop 1.16.1
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/samtools/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/samtools/samtools-1.16.1.ebuild | 47 |
2 files changed, 0 insertions, 48 deletions
diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest index d6c2ed1c0762..5787a3bb63e6 100644 --- a/sci-biology/samtools/Manifest +++ b/sci-biology/samtools/Manifest @@ -1,3 +1,2 @@ DIST samtools-0.1.20.tar.gz 566387 BLAKE2B a62d74c408877754af50f5e5fea0e2289ec1e0c9f25013ed0d039bfe8ef61108600d917f8c9d356e98aca632795b4eb0f01ea1b54526a652577fb74a38a433c2 SHA512 15bd8cf401d14c1ab4faa591b6054f5ea9731c4e966f37f71d33d9081a270cfeb91e8a3d80c631e0725b49da81387f824c206e8c21553ad554d0cfc5c238a6e5 -DIST samtools-1.16.1.tar.bz2 8217689 BLAKE2B 51ca62655d1f43dd0c6f9bd38b323b8a9d8f7486ce42496e21186da06ea881d94e096214720f3fb8d1dd12d7a23881bc3b25e27b1a845d56157ac7ffda7130c1 SHA512 f9d6b8652234c782a1b369f028073ad4a66c44e9620ae60f0ecb35e0874f04ca633713078b692fdc1a1cc4f884ebdbf3ecae6881f11fb3b4fd3d27c5b8da67ba DIST samtools-1.17.tar.bz2 8605080 BLAKE2B 09cb0bff7bf7113a77f57fdb879765b28b65461a574e4a1ab20ae2327af46e5616e04f03eb68706d42ba0643e887d7921974a3d78c5f87d296a4c3b691215260 SHA512 107a6df858c6bd2556ba4e86cc1922c3184df095f347039fa94bfd24e5ee21e1a4a9fba5a7cce248a06ad47f99978d9aae570efee7e30e165f33ea848a2cd3c3 diff --git a/sci-biology/samtools/samtools-1.16.1.ebuild b/sci-biology/samtools/samtools-1.16.1.ebuild deleted file mode 100644 index 8047657df992..000000000000 --- a/sci-biology/samtools/samtools-1.16.1.ebuild +++ /dev/null @@ -1,47 +0,0 @@ -# Copyright 1999-2022 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -inherit toolchain-funcs - -DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" -HOMEPAGE="http://www.htslib.org/" -SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" - -RDEPEND=" - dev-lang/perl - =sci-libs/htslib-$(ver_cut 1-2)*:= - sys-libs/ncurses:=[unicode(+)] - sys-libs/zlib" -DEPEND="${RDEPEND}" -BDEPEND="virtual/pkgconfig" - -src_prepare() { - default - - # remove bundled htslib - rm -r htslib-* || die -} - -src_configure() { - econf \ - --with-ncurses \ - --with-htslib=system \ - CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw || die)" -} - -src_compile() { - emake AR="$(tc-getAR)" -} - -src_install() { - default - - dodoc -r examples - docompress -x /usr/share/doc/${PF}/examples -} |