Version bump for app-sci/emboss-2.9.0

4 files changed, 74 insertions, 2 deletions

diff --git a/app-sci/emboss/ChangeLog b/app-sci/emboss/ChangeLog
index 95aec1737421..4ba64c221077 100644
--- a/app-sci/emboss/ChangeLog
+++ b/app-sci/emboss/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for app-sci/emboss
 # Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/emboss/ChangeLog,v 1.10 2004/07/15 02:06:20 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-sci/emboss/ChangeLog,v 1.11 2004/07/20 00:34:01 ribosome Exp $
+
+  19 Jul 2004; Olivier Fisette <ribosome@gentoo.org> emboss-2.9.0.ebuild:
+  Version bump. Changed the configuration and install steps a bit to
+  reflect the fact that header files are now installed automatically.
 
   14 Jul 2004; Olivier Fisette <ribosome@gentoo.org>
   emboss-2.8.0-r3.ebuild: Modified configuration step to make the X and png
diff --git a/app-sci/emboss/Manifest b/app-sci/emboss/Manifest
index 55a72efd29de..d62faff0fa6c 100644
--- a/app-sci/emboss/Manifest
+++ b/app-sci/emboss/Manifest
@@ -1,7 +1,9 @@
 MD5 df9f374d37049fcb81ae4b7986f1d0a4 emboss-2.8.0-r2.ebuild 1424
-MD5 1cd185cf7619b45523abfcc0aebef872 ChangeLog 2045
+MD5 acb7132aecfe43f537808ec65eb57086 emboss-2.9.0.ebuild 1885
+MD5 a4d4643bb5e7973c0162b710121a0772 ChangeLog 2259
 MD5 6051afb1f26bf343082490327784b958 metadata.xml 1013
 MD5 f4ef6ae05458bbe72b97eecb80e42151 emboss-2.8.0-r3.ebuild 2025
 MD5 048d6642b77660671ad5c64cdc351df6 files/digest-emboss-2.8.0-r2 66
 MD5 048d6642b77660671ad5c64cdc351df6 files/digest-emboss-2.8.0-r3 66
+MD5 68e42b6377bb0887a0aeac76cf530854 files/digest-emboss-2.9.0 66
 MD5 ef2dfa3d13837026f59c0cf5f04f67c5 files/22emboss-r1 110
diff --git a/app-sci/emboss/emboss-2.9.0.ebuild b/app-sci/emboss/emboss-2.9.0.ebuild
new file mode 100644
index 000000000000..a3664963a708
--- /dev/null
+++ b/app-sci/emboss/emboss-2.9.0.ebuild
@@ -0,0 +1,65 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/emboss/emboss-2.9.0.ebuild,v 1.1 2004/07/20 00:34:01 ribosome Exp $
+
+DESCRIPTION="The European Molecular Biology Open Software Suite: a sequence analysis package."
+HOMEPAGE="http://emboss.sourceforge.net/"
+SRC_URI="ftp://ftp.uk.embnet.org/pub/EMBOSS/EMBOSS-${PV}.tar.gz"
+LICENSE="GPL-2 LGPL-2"
+
+SLOT="0"
+KEYWORDS="~x86"
+IUSE="X png icc no-biodata"
+
+RDEPEND="X? ( virtual/x11 )
+	png? (
+		sys-libs/zlib
+		media-libs/libpng
+		>=media-libs/gd-1.8
+	)
+	app-sci/primer3
+	app-sci/clustalw"
+
+PDEPEND="!no-biodata? (
+		app-sci/aaindex
+		app-sci/cutg
+		app-sci/prints
+		app-sci/prosite
+		app-sci/rebase
+		app-sci/transfac
+	)"
+
+DEPEND="icc? ( dev-lang/icc )
+	${RDEPEND}"
+
+S=${WORKDIR}/EMBOSS-${PV}
+
+src_compile() {
+	if use icc; then
+		CC=/opt/intel/compiler80/bin/icc
+		CXX=/opt/intel/compiler80/bin/icc
+	fi
+	EXTRA_CONF="--includedir=${D}/usr/include/emboss"
+	! use X && EXTRA_CONF="${EXTRA_CONF} --without-x"
+	! use png && EXTRA_CONF="${EXTRA_CONF} --without-pngdriver"
+
+	econf ${EXTRA_CONF} || die
+	# Do not install the JEMBOSS component (the --without-java configure option
+	# does not work). JEMBOSS will be available as a separate package.
+	sed -i -e 's/SUBDIRS = plplot ajax nucleus emboss test doc jemboss/SUBDIRS = plplot ajax nucleus emboss test doc/' Makefile
+	emake || die
+}
+
+src_install() {
+	einstall || die
+	dodoc AUTHORS ChangeLog FAQ NEWS README THANKS
+
+	# Install env file for setting libplplot and acd files path.
+	insinto /etc/env.d
+	newins ${FILESDIR}/22emboss-r1 22emboss
+
+	# Symlink preinstalled docs to /usr/share/doc.
+	dosym /usr/share/EMBOSS/doc/manuals /usr/share/doc/${PF}/manuals
+	dosym /usr/share/EMBOSS/doc/programs /usr/share/doc/${PF}/programs
+	dosym /usr/share/EMBOSS/doc/tutorials /usr/share/doc/${PF}/tutorials
+}
diff --git a/app-sci/emboss/files/digest-emboss-2.9.0 b/app-sci/emboss/files/digest-emboss-2.9.0
new file mode 100644
index 000000000000..ab9c2bc595ca
--- /dev/null
+++ b/app-sci/emboss/files/digest-emboss-2.9.0
@@ -0,0 +1 @@
+MD5 c6facfd1750e88a0c8b7bb7ac826d472 EMBOSS-2.9.0.tar.gz 14479274