New multiple sequence alignment package. Perhaps the most accurate and fastest local aligner.

Package-Manager: portage-2.1_pre4-r1

5 files changed, 74 insertions, 0 deletions

diff --git a/sci-biology/dialign-t/ChangeLog b/sci-biology/dialign-t/ChangeLog
new file mode 100644
index 000000000000..8d05a1c56b83
--- /dev/null
+++ b/sci-biology/dialign-t/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for sci-biology/dialign-t
+# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/dialign-t/ChangeLog,v 1.1 2006/02/21 20:50:32 spyderous Exp $
+
+*dialign-t-0.2.1 (21 Feb 2006)
+
+  21 Feb 2006; Donnie Berkholz <spyderous@gentoo.org>; +metadata.xml,
+  +dialign-t-0.2.1.ebuild:
+  New multiple sequence alignment package. Perhaps the most accurate and
+  fastest local aligner.
+
diff --git a/sci-biology/dialign-t/Manifest b/sci-biology/dialign-t/Manifest
new file mode 100644
index 000000000000..2ffc9309d6f5
--- /dev/null
+++ b/sci-biology/dialign-t/Manifest
@@ -0,0 +1,12 @@
+MD5 2c6b67c9344cd10917f2b562dce344ea ChangeLog 446
+RMD160 290e5d90f9611da5f5798c029ffcf702dab00ad8 ChangeLog 446
+SHA256 16812346cfe234dd960970e313f916927ad884c828e44571f09fe5c44116d80b ChangeLog 446
+MD5 6d36d03cfd276931b3e28533f1d3fc8d dialign-t-0.2.1.ebuild 1009
+RMD160 f208e037ad5842eb064a1c7b22fef562b900b487 dialign-t-0.2.1.ebuild 1009
+SHA256 44a72b3a96915240d32cc5c9e14be405ed5a5ba9b7347f5ed550d5f0c6e5d7e8 dialign-t-0.2.1.ebuild 1009
+MD5 20a9e61f87048ee301d0cb690b890ede files/digest-dialign-t-0.2.1 250
+RMD160 9d920eafc14c5c82bb7f59a0589570c52ce5e292 files/digest-dialign-t-0.2.1 250
+SHA256 13b80f9063a8294da8e20803cd0ab7ac56a38eb1ba5548885f52000103db8795 files/digest-dialign-t-0.2.1 250
+MD5 af1bfbb0777267a03e889b08173f2757 metadata.xml 248
+RMD160 6488d9f1ef3e05e6ac5a29ddcc818e5ead0a5230 metadata.xml 248
+SHA256 de0ad7dc383b462c407cae015684d27c090455eac87c6f0f9ff581ef6e0b5b27 metadata.xml 248
diff --git a/sci-biology/dialign-t/dialign-t-0.2.1.ebuild b/sci-biology/dialign-t/dialign-t-0.2.1.ebuild
new file mode 100644
index 000000000000..0eea4e6dff6b
--- /dev/null
+++ b/sci-biology/dialign-t/dialign-t-0.2.1.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/dialign-t/dialign-t-0.2.1.ebuild,v 1.1 2006/02/21 20:50:32 spyderous Exp $
+
+inherit multilib toolchain-funcs
+
+MY_P="DIALIGN-T_${PV}"
+DESCRIPTION="An improved algorithm for segment-based multiple sequence alignment"
+HOMEPAGE="http://dialign-t.gobics.de/"
+SRC_URI="http://dialign-t.gobics.de/${MY_P}.tar.gz"
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~x86"
+IUSE=""
+RDEPEND=""
+DEPEND="${RDEPEND}"
+S="${WORKDIR}/${MY_P}"
+
+src_compile() {
+	cd ${S}/source
+	emake clean
+	emake \
+		CPPFLAGS="${CFLAGS}" \
+		|| die "make failed"
+}
+
+src_install() {
+	DESTTREE="/usr" dobin ${S}/source/dialign-t
+	dohtml ${S}/doc/html/*
+	dodoc ${S}/doc/user_guide*
+	insinto /usr/$(get_libdir)/${PN}/conf
+	doins ${S}/conf/*
+}
+
+pkg_postinst() {
+	ewarn "The configuration directory is"
+	ewarn "${ROOT}usr/$(get_libdir)/${PN}/conf"
+	ewarn "You will need to pass this to ${PN} on every run."
+}
diff --git a/sci-biology/dialign-t/files/digest-dialign-t-0.2.1 b/sci-biology/dialign-t/files/digest-dialign-t-0.2.1
new file mode 100644
index 000000000000..fd423eb5e37f
--- /dev/null
+++ b/sci-biology/dialign-t/files/digest-dialign-t-0.2.1
@@ -0,0 +1,3 @@
+MD5 d1d4fc381a009c68387e159b78b33801 DIALIGN-T_0.2.1.tar.gz 1635888
+RMD160 a43807668354120b873cad0120a7691b6860ca28 DIALIGN-T_0.2.1.tar.gz 1635888
+SHA256 2249bf9007588e891525b4edc085285f1390c2bf8d42ce327aa9217130d7e930 DIALIGN-T_0.2.1.tar.gz 1635888
diff --git a/sci-biology/dialign-t/metadata.xml b/sci-biology/dialign-t/metadata.xml
new file mode 100644
index 000000000000..211b8bd0f0a4
--- /dev/null
+++ b/sci-biology/dialign-t/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<maintainer>
+<email>spyderous@gentoo.org</email>
+<name>Donnie Berkholz</name>
+</maintainer>
+</pkgmetadata>